Publications

Pingyi Chen, Honglin Li, Chenglu Zhu, Sunyi Zheng, Zhongyi Shui, Lin Yang (2024). WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole-Slide Images. Medical Image Computing and Computer Assisted Intervention – MICCAI 2024.

Honglin Li, Yunlong Zhang, Pingyi Chen, Zhongyi Shui, Chenglu Zhu, Lin Yang (2024). Rethinking Transformer for Long Contextual Histopathology Whole Slide Image Analysis. Advances in Neural Information Processing Systems.

Yuxuan Sun, Hao Wu, Chenglu Zhu, Sunyi Zheng, Qizi Chen, Kai Zhang, Yunlong Zhang, Xiaoxiao Lan, Mengyue Zheng, Jingxiong Li, Others (2024). PathMMU: A Massive Multimodal Expert-Level Benchmark for Understanding and Reasoning in Pathology. arXiv preprint arXiv:2401.16355.

Yuxuan Sun, Chenglu Zhu, Sunyi Zheng, Kai Zhang, Lin Sun, Zhongyi Shui, Yunlong Zhang, Honglin Li, Lin Yang (2024). Pathasst: A generative foundation ai assistant towards artificial general intelligence of pathology. Proceedings of the AAAI Conference on Artificial Intelligence.

Shichuan Zhang, Chenglu Zhu, Honglin Li, Jiatong Cai, Lin Yang (2024). Gradient-aware learning for joint biases: Label noise and class imbalance. Neural Networks.

Zhongyi Shui, Sunyi Zheng, Chenglu Zhu, Shichuan Zhang, Xiaoxuan Yu, Honglin Li, Jingxiong Li, Pingyi Chen, Lin Yang (2024). DPA-P2PNet: Deformable Proposal-Aware P2PNet for Accurate Point-Based Cell Detection. Proceedings of the AAAI Conference on Artificial Intelligence.

Zhongyi Shui, Yunlong Zhang, Kai Yao, Chenglu Zhu, Yuxuan Sun, Lin Yang (2023). Unleashing the Power of Prompt-driven Nucleus Instance Segmentation. arXiv preprint arXiv:2311.15939.

Yunlong Zhang, Yuxuan Sun, Sunyi Zheng, Zhongyi Shui, Chenglu Zhu, Lin Yang (2023). Test-Time Training for Semantic Segmentation with Output Contrastive Loss. arXiv preprint arXiv:2311.07877.

Honglin Li, Chenglu Zhu, Yunlong Zhang, Yuxuan Sun, Zhongyi Shui, Wenwei Kuang, Sunyi Zheng, Lin Yang (2023). Task-specific fine-tuning via variational information bottleneck for weakly-supervised pathology whole slide image classification. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition.

Zhongyi Shui, Yizhi Zhao, Sunyi Zheng, Yunlong Zhang, Honglin Li, Shichuan Zhang, Xiaoxuan Yu, Chenglu Zhu, Lin Yang (2023). Semi-supervised Cell Recognition under Point Supervision. arXiv preprint arXiv:2306.08240.